Soma · Disease Ontology

Morbus

Morbus is the human disease ontology, taxonomy, and model inside Persona. It organizes disease knowledge without assuming that every inherited clinical category is a clean natural kind — working from the hypothesis that many diseases are better understood as intersecting processes than as single objects.

15 interactive exemplars below · shareable via URL hash

15 interactive exemplars9 decomposition axes5 primary etiologic4 secondary physiological6 hybrid / multiaxial

Native Top-Level Distinction

Rather than starting from organ systems or specialty boundaries, Morbus organizes disease first by whether it is defined by a relatively identifiable cause, by emergent physiological dysregulation over time, or by both at once.

Primary Etiologic Diseases

Pathology is chiefly organized around a relatively identifiable initiating cause.

Physical injury

traumaburnsfrostbite

Deficiency

scurvyiron-deficiency anaemiaiodine deficiency

Chemical exposure

asbestosissilicosisalcohol-related liver disease

Infectious disease

influenzatuberculosisHIV disease

Hereditary disease

cystic fibrosissickle cell diseaseHuntington disease

Secondary Physiological Diseases

Pathology emerges from complex dysregulation of physiological systems over time.

Cardiovascular

hypertensionatherosclerosisheart failure

Metabolic / endocrine

type 2 diabetesobesityPCOS

Neurological

Alzheimer diseaseParkinson diseaseepilepsy

Degenerative

osteoarthritissarcopeniamacular degeneration

Neoplastic

cancerleukaemialymphoma

Immunological / inflammatory

Crohn diseaselupusasthmaallergy

Hybrid / Multiaxial Diseases

Cause and physiology are both essential; one disease may belong to multiple explanatory layers.

Infection plus host response

sepsislong COVIDpost-infectious syndromes

Gene plus physiology

familial hypercholesterolaemiahaemochromatosisBRCA-associated cancer risk

Environment plus regulation

COPDoccupational asthmanon-alcoholic fatty liver disease

Immune plus tissue ecology

inflammatory bowel diseaserheumatoid arthritispsoriasis

Treatment effect

iatrogenic harmadverse drug reactionpost-surgical adhesions

Early Distinction Set

Beneath the top-level frame, Morbus separates the layers that get collapsed when a disease is treated as one object. A single condition is built from several of these primitives at once.

Disease entity

A condition treated as a recognizable, nameable whole.

Syndrome

A co-occurring cluster of features without a single settled cause.

Pathophysiological process

The unfolding mechanism by which function is disrupted.

Etiology

The initiating cause or causes that set the process in motion.

Risk state

A predisposing condition that raises the probability of disease.

Tissue lesion

The structural change visible at the level of tissue.

Molecular mechanism

The pathway, mutation, or signalling change underneath.

Immune pattern

The characteristic immune response or dysregulation involved.

Barrier dysfunction

Failure of epithelial, vascular, or other protective barriers.

Microbial ecology

The microbial community whose shifts shape the condition.

Complication

A downstream condition arising from the primary disease.

Treatment effect

Change in the disease produced by intervention.

Iatrogenic harm

Harm caused by medical care itself.

Lived experience

The condition as felt and narrated by the person living it.

Plural Classification Explorer

The working hypothesis of Morbus is that one condition is simultaneously anatomical, molecular, immunological, developmental, ecological, environmental, and social. Explore how key human diseases decompose along each axis rather than being forced into a single legacy category.

15 exemplar diseases · 9 axes each

Hybrid / Multiaxial Diseases

Inflammatory Bowel Disease (IBD)

A relapsing-remitting inflammatory condition of the gastrointestinal tract, emerging from polygenic risk, barrier disruption, and dysregulated host immune response to gut microbiota.

Ontology Crosswalks

ICD-11DD70 Crohn disease / DD71 Ulcerative colitis
SNOMED CT34000006 Crohn's disease / 64766004 Ulcerative colitis
MONDOMONDO:0005101 inflammatory bowel disease

Decomposition Along Morbus Axes (Click to inspect)

Digital Halo Integration

Digital Halo Knowledge Crosswalk

Simulate how a computational agent queries the database registries of the Digital Halo to aggregate physiological evidence. Click a tab to select a database.

Simulated API Request URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=inflammatory+bowel+disease+AND+NOD2&retmode=json

Querying literature database for clinical trials and review articles linking NOD2 mutations to Crohn's disease susceptibility.

Knowledge Synthesis & Findings

  • NOD2 (CARD15) was identified as the first susceptibility gene for Crohn's disease (2001).
  • Double-allele mutants have a 20-to-40-fold increased risk of developing ileal Crohn's disease.
  • Recent studies link NOD2 dysfunction to impaired defensin secretion by Paneth cells.
Simulated JSON ResponseSTATUS 200 OK
{
  "esearchresult": {
    "count": "1485",
    "retmax": "3",
    "idlist": ["38128312", "37992019", "37554318"],
    "translationset": [
      { "from": "inflammatory bowel disease", "to": "\"inflammatory bowel diseases\"[MeSH Terms] OR \"inflammatory bowel disease\"[All Fields]" }
    ]
  }
}

Crosswalk Layers

Existing nosologies are treated as reference mappings rather than the native Morbus hierarchy. ICD-11 in particular is a public reporting crosswalk — a way to translate out, not the structure to organize around.

Working Hypothesis

Many diseases are better understood as intersecting processes rather than single objects. Morbus supports plural classification: one condition may be simultaneously anatomical, molecular, immunological, developmental, ecological, environmental, and social.